ChromContact is a web server for analyzing spatial contact of chromosomes from the publicly available Hi-C data. For the input, ChromContact uses a genomic coordinate, a gene symbol, or a SNP ID in GWAS Catalog. To analyze multiple loci, users may specify the input genomic coordinates in BED format. For the output, ChromContact generates (1) a link to UCSC Genome Browser for visual inspection of the retrieved contact profiles together with other genome annotations; and (2) normalized contact counts in text-based BedGraph format for each specified cell type.

Input

-chr and position, gene, SNP


OR

Examples:“chr8:128,748,315”,“myc”,“rs6983267”
(For SNPs, only those in NHGRI GWAS Catalog are searchable.)
Genomic coordinate based on hg19.

-BED file

addition

Options

Cell Types: Resolution:

Results

  • Please specify the keyword.